Tools πŸ“Š
The Genome Nexus API powers several visualizations in cBioPortal, for instance:
  • the online Mutation Mapper Tool, which uses Genome Nexus to annotate mutations supplied in MAF format and draw a lollipop plot
  • Several annotations displayed in the mutation tables column of cBioPortal, e.g. on the Patient View Page​
For more information about the Genome Nexus and cBioPortal integration see the cBioPortal docs​
Note that Command Line Clients for annotating MAF and VCF are describe in the API section
Last modified 1mo ago
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