Tools 📊

The Genome Nexus API powers several visualizations in cBioPortal, for instance:

  • the online Mutation Mapper Tool, which uses Genome Nexus to annotate mutations supplied in MAF format and draw a lollipop plot

  • Several annotations displayed in the mutation tables column of cBioPortal, e.g. on the Patient View Page

For more information about the Genome Nexus and cBioPortal integration see the cBioPortal docs

Note that Command Line Clients for annotating MAF and VCF are describe in the API section