Genome Nexus
  • README
  • Architecture 📐
  • API ⚙️
  • Annotation Sources 🗄️
  • Annotate a variant 📄
  • Annotate a MAF File 📄
  • Annotate a VCF File 📄
  • Tools 📊
  • About 👥
  • Used By 🔧
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Tools 📊

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Last updated 2 years ago

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The Genome Nexus API powers several visualizations in , for instance:

  • the online , which uses Genome Nexus to annotate mutations supplied in MAF format and draw a lollipop plot

  • Several annotations displayed in the mutation tables column of cBioPortal, e.g. on the

For more information about the Genome Nexus and cBioPortal integration see the

Note that Command Line Clients for annotating MAF and VCF are describe in the section

cBioPortal
Mutation Mapper Tool
Patient View Page
cBioPortal docs
API